3227143a1c
Systematic test code for FragmentPileup
...
-- Creates all combinatinos of overlapping and non-overlapping read pair pileups in all orientations and first/second pairings to validate fragment detection.
2011-10-19 17:50:27 -04:00
30d23942b1
Renamed ReadBackedPileup getXSampleName() functions to getXSample
...
-- now that we don't have Sample objects floating around we don't have to have all of the Name extensions on our functions
2011-09-30 10:02:57 -04:00
9458f01409
Test cleanup of Sample object
2011-09-29 15:13:05 -04:00
5c9227cf5e
Further cleanup of Sample database
...
-- Removing more and more unnecessary code
-- Partial removal of type safe Sample usage. On the road to SampleDB only
2011-09-29 11:50:05 -04:00
2a0cd556d3
Further cleanup of Sample
...
-- Cleaned up interface functions in GAE
-- Added Walker.getSampleDB() function which is an easier option for tools to get the samples db
2011-09-29 10:34:51 -04:00
e76f381628
Moved sample package from DataSources to gatk, and renamed it samples
...
-- All associated changes to the codebase are just header updates
2011-09-29 09:57:15 -04:00
3c9497788e
Reorganized the codebase beneath top-level public and private directories,
...
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00
Mark DePristo
David Roazen