depristo
|
b7e4a015c0
|
static thread cache reset in UnitTest
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4870 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-17 21:53:10 +00:00 |
|
depristo
|
3bbc6a0540
|
Slightly more thread safe CachingIndexedFastaSequenceFile.java. Likely passes parallel testing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4869 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-17 21:05:17 +00:00 |
|
depristo
|
4a54f3f230
|
ThreadLocal version of CachingIndexedFastaSequenceFile. More efficient support for shared memory BAQ calculations
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4865 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-17 15:44:48 +00:00 |
|
depristo
|
44feb4a362
|
Improved BAQ implementation. Now supports adding BAQ tags to reads on the fly with ADD_TAG_ONLY option. Caching fasta reader implementation, and changes throughout the system to enable this. Many performance improvements throughout the system due to better reference access patterns.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4792 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-05 18:29:39 +00:00 |