chartl
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0d18bd1011
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Now that addAll() is in the superclass, no longer need this definition (which, without override, prevents the script from compiling anyway)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4862 348d0f76-0448-11de-a6fe-93d51630548a
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2010-12-17 05:36:31 +00:00 |
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chartl
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f8dd59c1d1
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Tightening of the batch merging pipeline. Optimized to run on hour queue, so please: if you run this, crush 'hour' with it. Testing is forthcoming, but it merged 700 samples overnight.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4805 348d0f76-0448-11de-a6fe-93d51630548a
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2010-12-08 14:36:23 +00:00 |
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chartl
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f4c43f013f
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Due to the overhead for reading VCF files (>32g for 700 5MB VCF files), batched merging has to generate likelihoods in batches.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4796 348d0f76-0448-11de-a6fe-93d51630548a
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2010-12-06 18:23:54 +00:00 |
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chartl
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220fb0c44a
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Added a pipeline for merging batches. For now takes a file containing a list of VCFs, and a file containing a list of bams. Does not do anything smart (e.g. if you leave out some .bams or add some extra ones, you will not be warned). Heavy lifting done in (the beginnings of) a library for managing multi-batch or multi-project tasks.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4771 348d0f76-0448-11de-a6fe-93d51630548a
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2010-12-02 07:31:59 +00:00 |