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3 Commits (bb6999b032a99e13987abc01fe8d1dc6541e083b)

Author SHA1 Message Date
kshakir 6fbd18c759 Cleaning up obsolete code. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5044 348d0f76-0448-11de-a6fe-93d51630548a
 2011-01-21 16:27:35 +00:00
kshakir 8855f080c2 For the fullCallingPipeline.q: 
- Reading the refseq table from the YAML if not specified on the command line.
 - Removed obsolete -bigMemQueue now that CombineVariants runs in 4g.
 - Added a -mountDir /broad/software option to work around adpr automount issues.
 - Merged the LSF preexec used for automount into the shell script used to execute tasks.
 - Using the LSF C Library to determine when jobs are complete instead of postexec.
 - Updated queue.sh to match the changes above.
 - Updated the FCPTest to match the changes above.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5036 348d0f76-0448-11de-a6fe-93d51630548a
 2011-01-20 22:34:43 +00:00
corin af60666f5d An example template for the shell script used to run the full calling pipeline on the broad system 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5022 348d0f76-0448-11de-a6fe-93d51630548a
 2011-01-19 20:28:59 +00:00