asivache
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b4136b6d6e
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a few tweaks to make it more robust: ignore reads with cigars containing anything but I,D,M; don't set up contig ordering manually, rely upon reference sequence and its dictionary; don't die if a record does not have NM tag, but faal back to direct counting instead; now requires reference as a cmdline arg
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@378 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-13 04:49:19 +00:00 |
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asivache
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453d13415d
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count variant as biallelic if it's just a non-ref homogeneous site!
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@326 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-08 01:57:27 +00:00 |
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asivache
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8ec427ab66
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latest version... still under dev/testing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@323 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-07 22:31:06 +00:00 |