6 Commits (b63d64bbbc73ab9ef2f8b60c0f63b35f9882c813)

Author	SHA1	Message	Date
ebanks	e50627a49e	1. Updated tests and added integration test for liftover code. ... 2. Updated liftover code (and scripts) to emit vcf 4.0 and no longer depend on VCFRecord. 3. Beagle walker now also emits vcf 4.0. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3767 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-12 17:58:18 +00:00
ebanks	15a6be5d50	Updated to reflect Mark's renaming binge ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3697 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-30 22:48:42 +00:00
ebanks	22abbc0edb	Stupid cent_os doesn't allow old style 'sort' conventions. Updating liftover script... ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3577 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-17 13:44:03 +00:00
ebanks	7cab994d88	Add argument to sortByRef for specifying the tmp directory for sorting. ... Update the liftover script to reflect this addition. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3323 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-07 13:53:26 +00:00
ebanks	bfc58c70fa	Adding newline ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3322 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-07 13:08:08 +00:00
ebanks	44de92e09d	Checking in the liftover script. I am including a post-processing walker to filter out bad records written in under 10 minutes as per my agreement with Mark. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3321 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-07 12:31:56 +00:00