chartl
|
9132c98eec
|
Slightly smarter interval list dealing (whole exome intervals are .interval_list, whole genome are .interval.list). Also use BTI with the Genomic Annotator
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3904 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 22:04:02 +00:00 |
|
chartl
|
54d93f63d2
|
Hacky fix for LSF confusion -- submitted jobs check to see if their directory exists, despite depending on the job which creates said directory. Filter strings now have escaped quotes.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3903 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 21:35:50 +00:00 |
|
chartl
|
0f9baa2e94
|
Ha ha ha ha ha
:(
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3902 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 20:48:35 +00:00 |
|
chartl
|
7a5ee485d2
|
Full pipeline now works through DAG creation. First draft; more work to do to make it cleaner and better command-line input handling (and properties handling); but the DAG is rendered and looks good.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3898 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 19:36:17 +00:00 |
|
chartl
|
4d4cf6e1dc
|
Updates to calling pipeline
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3896 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 18:37:20 +00:00 |
|
chartl
|
62a9217a61
|
A brute-force exome/genome independent end-to-end cleaning/calling pipeline using Queue
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3894 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-07-29 13:17:14 +00:00 |