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2 Commits (b472bab54ebc13feb6d7bb51abcef2a35c681d29)

Author SHA1 Message Date
Mauricio Carneiro 78d9bf7196 Added REVERT_SOFTCLIPPED_BASES capability to ReadClipper 
* New ClippingOp REVERT_SOFTCLIPPED_BASES turns soft clipped bases into matches.
    * Added functionality to clipping op to revert all soft clip bases in a read into matches
    * Added revertSoftClipBases function to the ReadClipper for public use
    * Wrote systematic unit tests
 2011-12-20 00:04:30 -05:00
Mauricio Carneiro 5b678e3b94 Remove ClippingOp UnitTests 
* all testing functionality is in the ReadClipperUnitTest, no need to double test.
* class and package naming cleanup
 2011-12-19 07:49:26 -05:00