gatk-3.8

Author	SHA1	Message	Date
depristo	8e9e2f4502	Revised ROD system. Split the system in Basic type and interface. Enabled more control over rod accessing, including an initialize() function to fetch headers and other options from the file. Added general tabular rod, which has a named columns and supports a map<String,String> interface. Comes with shiny new Junit system for RODs. Also, added simple python script for accessing picard data. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@716 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-14 21:06:28 +00:00
depristo	5a6892900e	fixing oddities in duplicates git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@628 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-07 18:55:45 +00:00
depristo	89a26a7078	Utilities for handling duplicates git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@620 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-07 18:02:24 +00:00