rpoplin
|
20f29e4690
|
In the Methods development pipeline the call confidence threshold must be lowered from the default value for lowpass calling. What a bone-headed mistake!
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4941 348d0f76-0448-11de-a6fe-93d51630548a
|
2011-01-05 20:30:55 +00:00 |
|
rpoplin
|
7185fcb47b
|
Committing my notes about the methods development pipeline so we stay synced up while I'm on vacation. Cheers.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4891 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-21 21:14:20 +00:00 |
|
rpoplin
|
4ca1da1d07
|
Updating the NA12878.HiSeq bam file to be the correct bam file in the methods development qscript.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4879 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-20 14:53:10 +00:00 |
|
rpoplin
|
8fac346ac1
|
Misc cleanup in Methods Development Qscript
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4878 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-20 04:24:25 +00:00 |
|
rpoplin
|
34ab5b4889
|
Turning on BAQ in Methods Development pipeline. A new dataset is added: 363 EUR samples from the November 1000G release.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4877 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-19 21:13:25 +00:00 |
|
rpoplin
|
15a33545f4
|
Updating Methods development pipeline qscript with the bam lists for all the data sets. It is ready for people to start running with it.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4875 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-18 22:19:14 +00:00 |
|
rpoplin
|
bdef4e775a
|
Initial checkin of methods development pipeline qscript. It allows the methods dev team to run an overnight job which calls and recalibrates a variety of data sets and allows for an end-to-end sanity check of final results for potential changes to the methods. It isn't meant to be used by anybody quite yet, but shows the general structure and flow.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4871 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-12-17 22:14:02 +00:00 |