depristo
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7880863eb7
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Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4267 348d0f76-0448-11de-a6fe-93d51630548a
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2010-09-12 15:07:38 +00:00 |
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depristo
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7ad8fbdd5a
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Moved GATKException to exceptions
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4266 348d0f76-0448-11de-a6fe-93d51630548a
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2010-09-12 14:47:19 +00:00 |
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depristo
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8f1a32acae
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All exceptions thrown by the GATK have been reviewed and UserErrors replaced where appropriate. Shazam. Another check-in will remove the GATKException and restore the StingException.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4252 348d0f76-0448-11de-a6fe-93d51630548a
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2010-09-10 15:25:30 +00:00 |
kiran
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a687c6bc03
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Added a method to refresh an NFS mount point (necessary to prevent NFS flakiness when running on the LSF farm.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@774 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-21 19:31:54 +00:00 |
hanna
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e812cfbf55
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Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@229 348d0f76-0448-11de-a6fe-93d51630548a
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2009-03-30 23:20:55 +00:00 |