1 Commits (b21f90aee0678e550746e101c6d0629ca962bce6)

Author	SHA1	Message	Date
ebanks	4ff8b8fc0e	1. Fixing a bug that Mark found where indel-containing clipped reads would get an original cigar tag even when they didn't actually get modified. ... 2. Added some useful logging messages. 3. Added a oneoffs walker to calculate the number of realigned reads and intervals containing them. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3860 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-23 14:24:01 +00:00