gatk-3.8

Commit Graph

Author	SHA1	Message	Date
carneiro	aab0ec209b	small bug fix on chromosome names. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5168 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-01 20:55:19 +00:00
carneiro	a2e2a6a9c3	A script to convert an intervals file into a sorted unoverlapping intervals file. Super fast implementation using multiple hashes, should do the job instantly no matter how big the intervals are. ps: this utility is similar to -im on GATK, but for queue scripts we need the intervals file fixed before we can run Unified Genotyper because of scatter-gather. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5117 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-28 21:46:41 +00:00

Author

SHA1

Message

Date

carneiro

aab0ec209b

small bug fix on chromosome names.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5168 348d0f76-0448-11de-a6fe-93d51630548a

2011-02-01 20:55:19 +00:00

carneiro

a2e2a6a9c3

A script to convert an intervals file into a sorted unoverlapping intervals file. Super fast implementation using multiple hashes, should do the job instantly no matter how big the intervals are.

ps: this utility is similar to -im on GATK, but for queue scripts we need the intervals file fixed before we can run Unified Genotyper because of scatter-gather.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5117 348d0f76-0448-11de-a6fe-93d51630548a

2011-01-28 21:46:41 +00:00

2 Commits (b1ff371c8f70bd8070fdb57825826540cbe96f37)