Commit Graph

3 Commits (b19e4b502bda05b633f61e25137e01b145215bf6)

Author SHA1 Message Date
depristo b19e4b502b Continuing to expand support for ROD. These edits add a program, PrepareROD, that sorts and prepares RODs for consumption by the analysis TK.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@17 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-01 23:32:23 +00:00
depristo f64f3e2d90 Phase II support for generic reference order data set parsing.
Can read GFF and dbSNP files correctly.  
Traversal engine now supports keeping moving window of reference ordered data along with the locus iterator.
Tested by walking through a sam file keeping track of the dbSNP positions encountered -- they definitely look right...


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@13 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 20:47:48 +00:00
depristo 17aabb38f9 Basic reorganization of tree
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@8 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 15:28:56 +00:00