2 Commits (af440943a41322147b663a4c069f3b9b33329bb2)

Author	SHA1	Message	Date
ebanks	31b1d60d28	Generalized the StratifiedAlignmentContext code so that it's easy to add new ways to stratify. Then added an MQ0-free stratification so we don't need to be carrying around 2 different alignment contexts (full vs. mq0-free) anymore. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2314 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-10 19:50:06 +00:00
ebanks	11ac7885b0	Pull out StratifiedAlignmentContext code so other walkers can use it. ... This is basically a wrapper class around AlignmentContext which allows you to stratify a context by e.g. reads on forward vs. reverse strands. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2312 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-10 19:21:16 +00:00