3 Commits (ada4c5a13cee8abba445fc8cdd99b66add8bfc3e)

Author	SHA1	Message	Date
asivache	e4acd14675	Now GenomicMap maps (and RemapAlignment outputs) regions between intervals on the master reference as 'N' cigar elements, not 'D'. 'D' is now used only for bona fide deletions. ... Also: do not die if alignment record does not have NM tags (but mapping quality will not be recomputed after remapping/reducing for the lack of required data) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1411 348d0f76-0448-11de-a6fe-93d51630548a	2009-08-11 21:10:17 +00:00
asivache	36312ae4b2	tiny cleanup ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1401 348d0f76-0448-11de-a6fe-93d51630548a	2009-08-10 20:26:52 +00:00
asivache	921d4f4e95	RemapAlignments is a standalone picard-level tool that does not use gatk engine; moved to 'tools' ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1396 348d0f76-0448-11de-a6fe-93d51630548a	2009-08-10 15:41:07 +00:00