gatk-3.8

Author	SHA1	Message	Date
depristo	f29bb0639b	Documentation and cleanup of the distributed GATK implementation. Detailed documentation -- given that Matt will be extending the system in the near future -- about how the locking and processing trackers work. Added error trapping to note that distributed, shared-memory parallelism isn't yet implemented, instead of just not working silently. General utility function for the analysis of distributedGATK operation in the analysis directory git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5106 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-28 03:40:09 +00:00
depristo	c50f39a147	V3 of the distributed GATK. High-efficiency implementation. Support for status tracking for debugging and display. Still not safe for production use due to NFS filelock problem. V4 will use alternative file locking mechanism git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5063 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-24 16:45:07 +00:00
depristo	8ece2b9230	Distributed GATK analysis scripts git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5049 348d0f76-0448-11de-a6fe-93d51630548a	2011-01-21 22:09:07 +00:00