5 Commits (ac983e7a0bec8636e7ce410030e5a09b65dc04f2)

Author	SHA1	Message	Date
chartl	ac983e7a0b	Ran the rod on a binary plink file with indels and it just worked. Love it when that happens! Unit test to ensure this behaviour is maintained. ... ****** PLINK ROD IS NOW READY TO GO ******** git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2670 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-23 18:13:05 +00:00
chartl	ae22d35212	PlinkRod now correctly parses binary files without indels; unit test added for this behavior. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2669 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-23 17:34:06 +00:00
chartl	94dc09c865	PlinkRod now successfully instantiates on the binary ped file trio (.bim, .bam, .fam) for non-indel files. ... Upcoming: Test that the instantiation is correct, do it for indel-containing files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2668 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-23 16:13:24 +00:00
chartl	01db93299c	PlinkRodWithGenomeLoc now properly handels indels. ... There is now a DELETION_REFERENCE allele type to allow for the storage of multi-base references rather than point-mutation references. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2667 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-23 07:34:52 +00:00
chartl	42fb85e7f3	PlinkRodWithGenomeLoc now properly parses text plink files. Unit test added to test this functionality. Indels and binary files to come. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2666 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-23 06:19:26 +00:00