gatk-3.8

Author	SHA1	Message	Date
hanna	420cef4094	Added version numbers to the help doclet extractor. Since the help system is behaving more like a resource bundle at this point, changed it over to use the Java ResourceBundle support classes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2606 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-15 23:31:29 +00:00
alecw	c0c9f6c8b6	Create package that contains just what Picard needs. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2421 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-21 18:48:27 +00:00
ebanks	717eb1de96	- Depth annotation now includes MQ0 reads - Removed MQ0 annotation - Updated RMS MQ annotation to use new pileup - UG now outputs all of its arguments as key/value pairs in the header (for VCF) - Cleaned up VCFGenotypeWriterAdapter interface a bit git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2288 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-09 02:53:00 +00:00
alecw	2cf21317f9	Create package that contains just what Picard needs. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2282 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-07 21:22:07 +00:00