gatk-3.8

Author	SHA1	Message	Date
Mauricio Carneiro	116885a450	Removed the "Walker" suffix from all walkers that had it. * Did not touch archived walkers... those can be named whatever. * Kept abstract classes that end in Walker untouched (e.g. LocusWalker, ReadWalker, ...) * Renamed a few inner classes due to conflict when stripping off Walker from their outer classes: ContigStats, FlagStats and FastaStats.	2012-07-20 17:27:11 -04:00
Matt Hanna	8bb4d4dca3	First pass of the asynchronous block loader. Block loads are only triggered on queue empty at this point. Disabled by default (enable with nt:io=?).	2011-11-18 15:02:59 -05:00
Mark DePristo	9127849f5d	BugFix for unit test	2011-09-07 14:54:10 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00