gatk-3.8

Commit Graph

Author	SHA1	Message	Date
hanna	861ee3e37a	Changing testing framework from junit -> testng, for its enhanced configurability. Initial test to see how Bamboo will respond. More detailed email to follow. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4609 348d0f76-0448-11de-a6fe-93d51630548a	2010-11-01 21:31:44 +00:00
kshakir	20b38b38f3	Updated from SnakeYAML 1.6 to 1.7. Added a pipeline java bean and YAML utility to serialize java beans. Added a getFirehosePipelineYaml.sh that can pull firehose data into the pipeline yaml file format. Updated the fullCallingPipeline.q to begin using the pipeline yaml file format for bams and reference. More changes to come as this code gets tested out in the fullCallingPipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4329 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-22 19:47:49 +00:00

Author

SHA1

Message

Date

hanna

861ee3e37a

Changing testing framework from junit -> testng, for its enhanced configurability.

Initial test to see how Bamboo will respond.  More detailed email to follow.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4609 348d0f76-0448-11de-a6fe-93d51630548a

2010-11-01 21:31:44 +00:00

kshakir

20b38b38f3

Updated from SnakeYAML 1.6 to 1.7.

Added a pipeline java bean and YAML utility to serialize java beans.
Added a getFirehosePipelineYaml.sh that can pull firehose data into the pipeline yaml file format.
Updated the fullCallingPipeline.q to begin using the pipeline yaml file format for bams and reference.
More changes to come as this code gets tested out in the fullCallingPipeline.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4329 348d0f76-0448-11de-a6fe-93d51630548a

2010-09-22 19:47:49 +00:00

2 Commits (a8ab5a5fb9be8ab7a23652be097bd38a97aab4ac)