4 Commits (a58ddab93b460378c80ee239c3b2a8fb488d994f)

Author	SHA1	Message	Date
Mauricio Carneiro	a58ddab93b	minQual and minPower filters added. VCF output added. ... Calls are now made based on the likelihood AC model. Two filters are applied: minQual and minPower. Output is now a VCF file with the variant context. It's now called the gatk's PoolCaller, no longer Replication Validation framework. Lots of testing ensue....	2011-07-28 18:58:36 -04:00
Mauricio Carneiro	8d7ef1bb51	Complete refactor of the ReplicationValidation framework, plus the following new functionality: ... * merges all pools in a lane. * merges all lanes in a site.	2011-07-21 21:39:00 -04:00
Mark DePristo	9992c373be	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00