Commit Graph

4 Commits (a58ddab93b460378c80ee239c3b2a8fb488d994f)

Author SHA1 Message Date
Mauricio Carneiro a58ddab93b minQual and minPower filters added. VCF output added.
Calls are now made based on the likelihood AC model. Two filters are applied: minQual and minPower. Output is now a VCF file with the variant context. It's now called the gatk's PoolCaller, no longer Replication Validation framework. Lots of testing ensue....
2011-07-28 18:58:36 -04:00
Mauricio Carneiro 8d7ef1bb51 Complete refactor of the ReplicationValidation framework, plus the following new functionality:
* merges all pools in a lane.
 * merges all lanes in a site.
2011-07-21 21:39:00 -04:00
Mark DePristo 9992c373be Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
David Roazen 3c9497788e Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00