5 Commits (a536e1da848fa8407557f0f850c78475255e9e8f)

Author	SHA1	Message	Date
David Roazen	a536e1da84	Move some VCF/VariantContext methods back to the GATK based on feedback ... -Moved some of the more specialized / complex VariantContext and VCF utility methods back to the GATK. -Due to this re-shuffling, was able to return things like the Pair class back to the GATK as well.	2013-01-29 16:56:55 -05:00
Ami Levy-Moonshine	4aaef495c6	correct the help message	2013-01-29 16:33:12 -05:00
David Roazen	f63f27aa13	org.broadinstitute.variant refactor, part 2 ... -removed sting dependencies from test classes -removed org.apache.log4j dependency -misc cleanup	2013-01-28 09:03:46 -05:00
Mauricio Carneiro	2a4ccfe6fd	Updated all JAVA file licenses accordingly ... GSATDG-5	2013-01-10 17:06:41 -05:00
Ami Levy-Moonshine	d4b4f95e12	move CatVariants to public	2013-01-07 15:07:16 -05:00