depristo
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f29bb0639b
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Documentation and cleanup of the distributed GATK implementation. Detailed documentation -- given that Matt will be extending the system in the near future -- about how the locking and processing trackers work. Added error trapping to note that distributed, shared-memory parallelism isn't yet implemented, instead of just not working silently. General utility function for the analysis of distributedGATK operation in the analysis directory
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5106 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-28 03:40:09 +00:00 |
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depristo
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be697d96f9
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An apparently robust implementation of the file locking for distributed computation, using Lucene's file creation locking approach. It is worth trying out for those with large-scale, high-cost data sets. Details and discussion at group meeting on Wednesday. Some cleanup still needed.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5079 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-26 13:45:40 +00:00 |
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depristo
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c50f39a147
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V3 of the distributed GATK. High-efficiency implementation. Support for status tracking for debugging and display. Still not safe for production use due to NFS filelock problem. V4 will use alternative file locking mechanism
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5063 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-24 16:45:07 +00:00 |
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depristo
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ff61aeb762
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continuing to push to get right answers for long-running jobs
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5054 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-22 15:02:02 +00:00 |
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depristo
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8ece2b9230
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Distributed GATK analysis scripts
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5049 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-21 22:09:07 +00:00 |
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depristo
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94b64ec54a
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Moving scala script into analysis directory
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5047 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-21 18:42:18 +00:00 |
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depristo
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63e8103c4e
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A new top-level directory to hold analysis scripts associated with specific analyses
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5046 348d0f76-0448-11de-a6fe-93d51630548a
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2011-01-21 18:40:02 +00:00 |