2d8653f493
Update pom versions to mark the start of GATK 3.2 development
2014-03-18 01:18:59 -04:00
a6a41c777c
Update pom versions for 3.1
2014-03-18 01:09:29 -04:00
7c34f05082
Merge remote-tracking branch 'origin/master' into intel
2014-03-10 14:07:36 -04:00
6e98e9e589
Removed g_haplotype* global variables in native code so that it works
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with multi-threading in Java.
Modified VectorLoglessPairHMM.java so that jniInitializeRegion and
jniFinalizeRegion are empty
2014-03-06 22:08:35 -08:00
a29777765d
Binary library
2014-03-06 11:14:46 -08:00
27e640d640
Modified SSE4.1 and 4.2 checks with _may_i_use_cpu_feature()
2014-03-06 08:51:11 -08:00
37f107cb3a
Using Mustafa's function _may_i_use_cpu_feature() for AVX check
2014-03-06 08:37:48 -08:00
9df59bd8cc
Update pom versions to mark the start of GATK 3.1 development
2014-03-06 00:05:58 -05:00
34edcb8ddf
Update pom versions for the 3.0 release
2014-03-05 23:37:21 -05:00
a893765ae2
Added license to Makefile
2014-03-03 09:11:02 -08:00
1b395a871a
1. Changed logger.info to logger.warn in PairHMMLikelihoodCalculationEngine.java
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2. Committing the right set of files after rebase
2014-02-28 16:08:28 -08:00
53d5bc93b2
Native library part of git repo
2014-02-26 11:44:28 -08:00
7e516b294f
Replaced local drmaa and Jama artifacts with versions from maven central.
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Removed unused caliper binary from local repo.
2014-02-22 01:21:35 +08:00
3848159086
Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.
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New properties to disable regenerating example resources artifact when each parallel test runs under packagetest.
Moved collection of packagetest parameters from shell scripts into maven profiles.
Fixed necessity of test-utils jar by removing incorrect dependenciesToScan element during packagetests.
When building picard libraries, run clean first.
Fixed tools jar dependency in picard pom.
Integration tests properly use the ant-bridge.sh test.debug.port variable, like unit tests.
2014-02-06 08:25:38 -05:00
857e6e0d6f
Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.
2014-02-03 13:50:46 -05:00
de13f41fc3
One step closer to a proper test-utils artifact. Using the maven-jar-plugin to create a test classifer, excluding actual tests, until we can properly separate the classes into separate artifacts/modules.
2014-02-03 13:50:46 -05:00
caa76cdac4
Added maven pom.xmls for various artifacts.
2014-02-03 13:50:46 -05:00
d1a689af33
Added new utility files used by maven build, including the ant-bridge script.
2014-02-03 13:50:46 -05:00
David Roazen
Karthik Gururaj
Khalid Shakir