depristo
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49b2622e3d
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Helper utility for merging BAM files
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@345 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-09 20:10:41 +00:00 |
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depristo
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9d35f0ca67
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The system now requires a dictionary file for a fasta file, or it throws an error. You can't just operate without a sequence dictionary any longer. We will transition to a GenomeLoc system that assumes a dictionary is available.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@320 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-07 22:21:57 +00:00 |
andrewk
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9dee9ab51c
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Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@163 348d0f76-0448-11de-a6fe-93d51630548a
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2009-03-24 03:58:03 +00:00 |
hanna
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2ee2623926
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Move non-java code out of playground.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@154 348d0f76-0448-11de-a6fe-93d51630548a
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2009-03-23 19:31:38 +00:00 |
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hanna
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5031875507
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Move to new directory organization.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@35 348d0f76-0448-11de-a6fe-93d51630548a
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2009-03-11 20:58:01 +00:00 |
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depristo
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bd1fadd9fe
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Validating walker for lots of bam files
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@10 348d0f76-0448-11de-a6fe-93d51630548a
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2009-02-28 17:05:08 +00:00 |
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depristo
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e892c3fd98
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Shouldn't be in the tree
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@9 348d0f76-0448-11de-a6fe-93d51630548a
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2009-02-28 15:31:17 +00:00 |
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depristo
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17aabb38f9
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Basic reorganization of tree
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@8 348d0f76-0448-11de-a6fe-93d51630548a
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2009-02-28 15:28:56 +00:00 |