gatk-3.8

Commit Graph

Author	SHA1	Message	Date
hanna	497ae700c4	A rethink of the existing BAM block extraction code: rather than working in chunk space directly, stream data in block space, converting to chunk space on demand. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2484 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-30 18:19:51 +00:00
hanna	87ff2b15d4	First step in introducing a patch to Picard: create our ideal interface into the BAM file for sharding. This commit can iterate over the BAM file, pulling out information about the blocks in the file without actually loading or decompressing the reads. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2434 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-23 21:35:08 +00:00

Author

SHA1

Message

Date

hanna

497ae700c4

A rethink of the existing BAM block extraction code: rather than working in

chunk space directly, stream data in block space, converting to chunk space
on demand.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2484 348d0f76-0448-11de-a6fe-93d51630548a

2009-12-30 18:19:51 +00:00

hanna

87ff2b15d4

First step in introducing a patch to Picard: create our ideal interface into the BAM file for sharding.

This commit can iterate over the BAM file, pulling out information about the blocks in the file without actually loading
or decompressing the reads.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2434 348d0f76-0448-11de-a6fe-93d51630548a

2009-12-23 21:35:08 +00:00

2 Commits (a18e31f5b8f1a935034e0a425c98f0b422f3fb9d)