kiran
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5d60efc498
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Factored out some simple stats accumulation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@733 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-17 03:37:57 +00:00 |
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kiran
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6f1559bd77
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Cleaned up a bit. Added some documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@728 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-15 21:22:24 +00:00 |
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kiran
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36db44620b
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Improved output. Can optionally limit the number reads actually called.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@720 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-15 00:07:57 +00:00 |
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kiran
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5858f20902
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Documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@712 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 18:58:43 +00:00 |
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kiran
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3761c0900b
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Added Bustard vs. Four-prob percent bases consistent output.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@710 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 18:01:41 +00:00 |
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kiran
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959cf09d4b
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Removed some debugging print statements.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@707 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 17:12:42 +00:00 |
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kiran
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2f42a643a8
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A new, much simpler (and now, complete) driver program for four-base probs. Serves as a model for anyone who wants to write their own driver program that trains and calls with data from a different source than the raw Illumina data.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@706 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 16:58:22 +00:00 |
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kiran
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4f2c8bf0a3
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Fixed an import statement that broke when all the files were moved to this directory.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@685 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-12 20:43:16 +00:00 |
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kiran
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688358190c
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Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@680 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-12 20:24:18 +00:00 |