9 Commits (9ff8a01da2bcd705b0c2fae7fe2d796beac8ba7f)

Author	SHA1	Message	Date
Mauricio Carneiro	ed91461c49	Data Processing Pipeline Test ... * Added standard pipeline test for the DPP * Added a full BWA pipeline test for the DPP * Included the extra files for the reference needed by BWA (to be used by DPP and PPP tests)	2011-12-12 00:24:51 -05:00
Mauricio Carneiro	cca8a18608	PPP pipeline test ... * added a pipeline test to the Pacbio Processing Pipeline. * updated exampleBAM with more complete RG information so we can use it in a wider variety of pipeline tests * added exampleDBSNP.vcf file with only chromosome 1 in the range of the exampleFASTA.fasta reference for pipeline tests	2011-12-11 17:32:21 -05:00
Mark DePristo	714cac21c9	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00
Mark DePristo	a3c5a31686	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00
Mark DePristo	c6ba944719	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00
Mark DePristo	bc902e8421	GZIP VCF for testing	2011-08-19 09:05:39 -04:00
Mark DePristo	449bf1b539	Testdata for diffObjects. ... PipelineTest updated to point to MD5DB.java	2011-07-18 10:47:03 -04:00
Mark A. DePristo	38740b0ff5	First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.	2011-07-04 16:11:42 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00