weisburd
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1cb8f51f8c
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Fixed -t arg
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3634 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-24 23:44:10 +00:00 |
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weisburd
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3cd0570c1e
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Now can run with multiple processes, multiple threads, or both
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3633 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-24 23:25:01 +00:00 |
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weisburd
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dae3ce2c0f
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changed log dir
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3632 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-24 23:08:13 +00:00 |
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weisburd
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fea8054e9e
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Updated long name for -l to --run-locally
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3631 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-24 22:26:45 +00:00 |
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weisburd
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72e669538e
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Updated arg description for -s
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3629 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-24 22:04:01 +00:00 |
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weisburd
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c0370f4d0a
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Added both inclusive and exclusive filters
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3538 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-11 18:40:41 +00:00 |
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weisburd
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d1a4c4f0d3
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Added -w filter option allowing user to specify chromosomes to be skipped.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3531 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-10 20:58:25 +00:00 |
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weisburd
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6fd2d39a7d
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Modified run_locally mode to use os.system(..) instead of popen
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3515 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-09 17:10:03 +00:00 |
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weisburd
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410afcdf2c
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Added parallelization options - when running locally, multiple processes can be spawned, or a -nt arg can be specified to run each TranscriptToInfo instance multi-threaded
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3507 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-08 22:48:07 +00:00 |
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weisburd
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04e14ef85a
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Refactored so it could be used for knownGene and CCDS as well as refGene
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3373 348d0f76-0448-11de-a6fe-93d51630548a
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2010-05-18 02:45:11 +00:00 |
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weisburd
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a462b5e1e7
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Changed a default path
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3291 348d0f76-0448-11de-a6fe-93d51630548a
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2010-05-03 17:07:21 +00:00 |
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weisburd
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0069cb426d
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Script for spawning LSF jobs that run the TranscriptToInfo.java walker on each of the 50 contigs.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3277 348d0f76-0448-11de-a6fe-93d51630548a
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2010-04-30 15:27:52 +00:00 |