gatk-3.8

Commit Graph

Author	SHA1	Message	Date
depristo	81c82ce134	Fix for Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4268 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-12 15:18:08 +00:00
kshakir	75c98c42b8	Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. Checked in example qscripts that are basically todo integration tests. Replaced use of queue @Input/@Output with Sting's new @Input/@Output. This means you'll now have to doc-ument the annotations. More work on dependency resolution cycles being created in the graph during scatter/gather. Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-25 20:51:13 +00:00
kshakir	e9ee55d7dd	A cleaned up functioning early, early access version of Queue for others to play with and provide feedback about next steps. Current version only has syntatic sugar for accessing the graph via rules ex. "bam" -> "bam.bai", "samtools index ${bam}" and DOES NOT have sugar for constructing your own graph. Usage info on the internal wiki at https://iwww.broadinstitute.org/gsa/wiki/index.php/Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3420 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-23 20:21:09 +00:00

Author

SHA1

Message

Date

depristo

81c82ce134

Fix for Queue

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4268 348d0f76-0448-11de-a6fe-93d51630548a

2010-09-12 15:18:08 +00:00

kshakir

75c98c42b8

Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.

Checked in example qscripts that are basically todo integration tests.
Replaced use of queue @Input/@Output with Sting's new @Input/@Output.  This means you'll now have to doc-ument the annotations.
More work on dependency resolution cycles being created in the graph during scatter/gather.
Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a

2010-06-25 20:51:13 +00:00

kshakir

e9ee55d7dd

A cleaned up functioning early, early access version of Queue for others to play with and provide feedback about next steps.

Current version only has syntatic sugar for accessing the graph via rules ex. "bam" -> "bam.bai", "samtools index ${bam}" and DOES NOT have sugar for constructing your own graph.
Usage info on the internal wiki at https://iwww.broadinstitute.org/gsa/wiki/index.php/Queue


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3420 348d0f76-0448-11de-a6fe-93d51630548a

2010-05-23 20:21:09 +00:00

3 Commits (9bfbc3b7843dd3321cf909ce6595ff782aafbdf2)