4 Commits (9bb241f06f9be1bd29fcb277600ccfc9df8c40d6)

Author	SHA1	Message	Date
Eric Banks	1acf0f0b2c	Fixing bug in fasta .fai generation: trim the contig names to the first whitespace if one appears. We now generate indexes identical to samtools.	2012-08-29 22:36:27 -04:00
Eric Banks	3253fc216b	FindBugs 'Maintainability' fixes	2012-08-16 15:53:06 -04:00
Mark DePristo	f3ad4ec94b	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00