gatk-3.8

Author	SHA1	Message	Date
Mark DePristo	e262f4e10b	gatkdoc now generalized to use @Annotation. Multiple subsystems now use annotation to receive docs Index expanded to use summary() annotation field UserExceptions, ReadFilters, GATK engine all use the system to generate docs Doclet expanded to handle lots of new cases	2011-07-23 20:00:35 -04:00
Mark DePristo	453954182e	Generalized the documentation system to use a class-specific annotation and processor. Need to generalize and bug fix the system. But at a high level it's working now.	2011-07-22 13:18:33 -04:00
Mark DePristo	9992c373be	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00