gatk-3.8

Commit Graph

Author	SHA1	Message	Date
kshakir	618c69f8dc	More updates to the CleanBamFile pipeline. Added the a CommandLineFunction.jobDependencies that will explicitly force a function to wait for a file, even if the value isn't otherwise listed on an @Input. More bug fixes and refactoring of functions. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4048 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-17 14:59:42 +00:00
kshakir	307c8ca027	Created a new playground script for cleaning bams in Firehose. Some refactoring of Queue extensions for reusability in scripts. Putting the extensions into the Queue.jar after building them. More updates to GATK walker arguments specifying @Input and @Output for Queue. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4032 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-13 23:52:24 +00:00

Author

SHA1

Message

Date

kshakir

618c69f8dc

More updates to the CleanBamFile pipeline.

Added the a CommandLineFunction.jobDependencies that will explicitly force a function to wait for a file, even if the value isn't otherwise listed on an @Input.
More bug fixes and refactoring of functions.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4048 348d0f76-0448-11de-a6fe-93d51630548a

2010-08-17 14:59:42 +00:00

kshakir

307c8ca027

Created a new playground script for cleaning bams in Firehose.

Some refactoring of Queue extensions for reusability in scripts.
Putting the extensions into the Queue.jar after building them.
More updates to GATK walker arguments specifying @Input and @Output for Queue.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4032 348d0f76-0448-11de-a6fe-93d51630548a

2010-08-13 23:52:24 +00:00

2 Commits (98f76796197aa74b46dc0e26fb555f392fdd597d)