53 Commits (9840a089ef7d5b5f756d34784a0222dc5d61ce5b)

Author	SHA1	Message	Date
depristo	f64f3e2d90	Phase II support for generic reference order data set parsing. ... Can read GFF and dbSNP files correctly. Traversal engine now supports keeping moving window of reference ordered data along with the locus iterator. Tested by walking through a sam file keeping track of the dbSNP positions encountered -- they definitely look right... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@13 348d0f76-0448-11de-a6fe-93d51630548a	2009-02-28 20:47:48 +00:00
depristo	dee840efa5	Moved out of java/src ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@12 348d0f76-0448-11de-a6fe-93d51630548a	2009-02-28 17:52:34 +00:00
depristo	17aabb38f9	Basic reorganization of tree ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@8 348d0f76-0448-11de-a6fe-93d51630548a	2009-02-28 15:28:56 +00:00