gatk-3.8

Author	SHA1	Message	Date
hanna	2c4de7b5c5	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along the pathway from command line to traversal engine. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@727 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-15 21:02:12 +00:00
hanna	d14cab0be7	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@693 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-13 21:32:05 +00:00
hanna	12ae3a22b6	Break locus context data access providers into modular components in preparation for traverse by loci. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@689 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-13 18:51:16 +00:00