2 Commits (903342745d5a761c4251acae0e50138ab72e7586)

Author	SHA1	Message	Date
depristo	6fe1c337ff	Pileup cleanup; pooled caller v1 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2070 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-18 17:03:48 +00:00
depristo	72a3d84ed2	General purpose pileup code -- you can use these features to obtain detailed pileup data from reads and offsets. Useful for all pileup based walkers. Expanded support for rodSAMPileup to enable the new ValidatingPileupWalker, which takes a samtools pileup output and checks that GATK gives identical output as samtools on a per base and per qual pileup. It's going to be a very useful validation tool. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@418 348d0f76-0448-11de-a6fe-93d51630548a	2009-04-14 22:13:10 +00:00