Guillermo del Angel
|
1c485d8b5e
|
Forgot that no matter how trivial a change it's a good idea to compile first
|
2011-10-11 11:18:41 -04:00 |
|
Guillermo del Angel
|
1975de1b32
|
Second try: hide --do_indel_quality in AnalyzeCovariates
|
2011-10-11 11:11:29 -04:00 |
|
Guillermo del Angel
|
6506ea83e8
|
Revert "Hide --do_indel_quality argument in AnalyzeCovariates. This shouldn't be documented nor used by external users"... a hidden passenger change made it through.
This reverts commit 70e10ccb1be90dcff8f4485ae6ee036db2d1ac86.
|
2011-10-11 11:03:12 -04:00 |
|
Guillermo del Angel
|
4c1d8c8d44
|
Hide --do_indel_quality argument in AnalyzeCovariates. This shouldn't be documented nor used by external users
|
2011-10-11 11:01:06 -04:00 |
Ryan Poplin
|
2585fc3d6c
|
Updating Rscript path doc text for Broad users
|
2011-09-21 15:22:26 -04:00 |
Mark DePristo
|
ccec0b4d73
|
AnalyzeCovariates uses the general RScript system now
-- Convenience constructor for collection for testing
-- callRScript() now accepts Objects not Strings, for convenience
|
2011-08-27 12:54:13 -04:00 |
|
Ryan Poplin
|
7c4ce6d969
|
Added GATKDocs for the VQSR walkers.
|
2011-08-18 14:00:39 -04:00 |
|
Ryan Poplin
|
bb79d3edae
|
Added GATKDocs for the BQSR walkers.
|
2011-08-18 10:57:48 -04:00 |
|
Mark DePristo
|
9992c373be
|
Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
|
2011-07-17 20:29:58 -04:00 |
|
Ryan Poplin
|
e8ed6b7f0f
|
Adding more comments to main VQSR walker. Fixing copyright lines. Bug fix for default paths to now point to public/R/ instead of R/ Bug fix in VQSR for the path to the R scripts not ending in a slash.
|
2011-07-06 10:01:14 -04:00 |
David Roazen
|
3c9497788e
|
Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
|
2011-06-28 06:55:19 -04:00 |