rpoplin
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b94d8dae17
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Removing requirement of providing known track in VQSR for the non-humans. Updating placement of legend on tranche plot.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5773 348d0f76-0448-11de-a6fe-93d51630548a
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2011-05-05 20:24:06 +00:00 |
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rpoplin
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5bade81c6d
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Adding tranche plot generation back to VQSR
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5736 348d0f76-0448-11de-a6fe-93d51630548a
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2011-05-03 19:26:26 +00:00 |
depristo
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356eb264ab
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Now says FNR, not FDR. We really need to clean up VQSR
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5243 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-15 12:28:09 +00:00 |
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depristo
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a6397ed8c3
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Default R script now plots sensitivity/specificity curve
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4825 348d0f76-0448-11de-a6fe-93d51630548a
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2010-12-13 16:55:11 +00:00 |
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depristo
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44d0cb6cde
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New version of cutting routines for VQSR. Old code removed. Working unit tests. Best practice with testng integration test (everyone look at it). Walker test now allows you to not specify no. input files, if it can infer input counts from MD5s
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4664 348d0f76-0448-11de-a6fe-93d51630548a
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2010-11-13 16:19:56 +00:00 |
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depristo
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ede87a03c2
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Nicer plotting routine for tranches. Add a third arg to suppress the legend.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4049 348d0f76-0448-11de-a6fe-93d51630548a
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2010-08-17 19:20:58 +00:00 |
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depristo
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e0abb73fd7
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plot now assumes 1 / 1000 is the min error rate, not 1/100
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4010 348d0f76-0448-11de-a6fe-93d51630548a
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2010-08-11 14:48:22 +00:00 |
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depristo
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672bee295c
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now plots tranches separately from optimizer
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4000 348d0f76-0448-11de-a6fe-93d51630548a
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2010-08-10 12:02:52 +00:00 |