kiran
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68c9455c0f
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Moved the base complement method to BaseUtils.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@711 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 18:57:48 +00:00 |
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kiran
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64c65c7751
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New methods to generated compressed SQ quality elements in line with the SAM spec.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@699 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 16:50:31 +00:00 |
depristo
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71e8f47a6c
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boundQual function for capping qual values
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@623 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-07 18:04:18 +00:00 |
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depristo
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1cc5e74435
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More ways to access quality utils
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@573 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-30 22:12:07 +00:00 |
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kiran
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59b2e6a90f
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Added some stuff for retreiving the base index and probability of a compressed base.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@329 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-08 15:52:58 +00:00 |
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kiran
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ef06924f73
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JavaDocs!
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@290 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-03 19:19:17 +00:00 |
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kiran
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b854c24575
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Oops. I gave this method the wrong name first time around.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@283 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-03 15:46:26 +00:00 |
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kiran
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a8a6c63a32
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A class with some static methods that aid the manipulation of quality scores and probabilities (including a method to compress a base and quality score into a byte for SAM output.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@271 348d0f76-0448-11de-a6fe-93d51630548a
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2009-04-02 22:06:15 +00:00 |