hanna
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7c30c30d26
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Cleaned up some duplicate code in preparation for making plugin dir configurable.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1270 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-16 22:02:21 +00:00 |
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hanna
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af7a759ba4
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Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1050 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-18 21:29:30 +00:00 |
aaron
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94b0e46d12
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checked in a sample xml file used to store the defaults for the SomaticCoverage tool, and added it to the SomaticCoverage.jar in build.sml. Also added a inputStream marshalling method to the GATKArgumentCollection.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@979 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-10 20:46:16 +00:00 |
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aaron
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026f68fb41
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a couple of quick name changes
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@976 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-10 20:02:52 +00:00 |
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aaron
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f304803811
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initial check-in of an easy way to create command line tools based on the GATK
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@970 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-10 17:34:02 +00:00 |