gatk-3.8

Author	SHA1	Message	Date
chartl	7a5ee485d2	Full pipeline now works through DAG creation. First draft; more work to do to make it cleaner and better command-line input handling (and properties handling); but the DAG is rendered and looks good. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3898 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-29 19:36:17 +00:00
chartl	4d4cf6e1dc	Updates to calling pipeline git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3896 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-29 18:37:20 +00:00
chartl	62a9217a61	A brute-force exome/genome independent end-to-end cleaning/calling pipeline using Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3894 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-29 13:17:14 +00:00