Commit Graph

6 Commits (79c86e211f8efa86d73a8a68ef077b736f5c626e)

Author SHA1 Message Date
Mark DePristo 40e06f9afb Fixed broken RodBinding defaults.
-- Verified now to be correct at runtime
-- UnitTest covers this
-- createTypeDefault now takes a Type, not a Class, so that parameterized classes can have their parameter fetched in the defaults.
2011-08-11 08:58:30 -04:00
Mark DePristo 0810c42309 GATK now does dynamic type determination for VCF files
Added UnitTests covering all of the cases.
2011-08-08 14:45:46 -04:00
Mark DePristo d0279bb28c RodBinding names are now defaulting to the ArgumentTypeDescriptor fullname
Nearly all of the tools are passing integrationtests
2011-08-03 20:48:11 -04:00
Mark DePristo 2874835997 Bug fix for type checking RodBindings
Now compares the feature class not the codec class.
UnitTests improvements
integrationtests on their way to actually running
2011-08-02 22:25:41 -04:00
Mark DePristo b5e843f8f0 Approaching the end for the new RodBinding system
-- support for explicit naming of bindings (-X:name,type x)
-- support for automatic naming of bindings in lists (-X:vcf foo.vcf -X:vcf bar.vcf will generate internal names X and X2)
-- ParserEngineUnitTest expanded to cover all of the Rodbinding cases
-- RodBindingUnitTest tests all of the low-level accessors
-- Parsing engine throws UserExceptions when bad bindings are provided on the command line
2011-08-02 22:00:06 -04:00
David Roazen 3c9497788e Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00