gatk-3.8

Author	SHA1	Message	Date
aaron	e11ca74eb5	removing some outdated ROD classes (PooledEMSNPROD and SangerSNPROD), removing an out-of-date interface (VariantBackedByBenotype), and moving AnalyzeAnnotationWalker over to VariationContext. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3188 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-16 18:59:29 +00:00
ebanks	9f3b99c11b	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. Removing obsolete genotyping classes. First stage of removing dependence on old Genotype class. More changes to come. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2960 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-09 03:41:07 +00:00
chartl	97f60dbc4b	Moving stuff around. ( core;playground ) ----> ( oneoffs ). I've been a bad boy, sullying the core codebase. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2745 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 22:50:03 +00:00