6 Commits (77af5822d47cd26b68593002b7118f02705fdde2)

Author	SHA1	Message	Date
hanna	77af5822d4	Correcting my incomplete understanding of how the BAM file index actually works. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2833 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-12 16:15:19 +00:00
hanna	57b8c9a53c	Supporting infrastructure for merging SAM files. Not yet integrated into the datasource. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2810 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-08 23:59:38 +00:00
hanna	e53432d54d	Checkpoint for combining adjacent intervals into the same shard. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2782 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-05 02:48:02 +00:00
hanna	e7f5c93fe5	Cleaning up the inheritance hierarchy from the previous commit. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2738 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 19:13:36 +00:00
hanna	3d922a019f	Basic support for very simple index-driven locus traversals. Interface has been changed to ... support batched intervals in a single shard, but intervals are not yet compressed into a single shard. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2730 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 03:14:26 +00:00
hanna	7893aaefe9	Updates to chunk iteration. Includes the return of the dreaded *2.java files; ... hopefully I can find a way to kill these off before the Picard patch is ready. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2550 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-08 20:20:56 +00:00