gatk-3.8

Author	SHA1	Message	Date
aaron	f5cba5a6bb	Fixed genome loc to be immutable, the only way to now change it's values is through the GenomeLocParser. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1132 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-30 19:17:24 +00:00
aaron	bcb64d92e9	Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1069 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-22 14:39:41 +00:00
depristo	7ed496b859	JUnit test for RefHanger git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@584 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-01 20:11:14 +00:00