hanna
|
820cf09198
|
Updated with last week / next week for 6 April.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-04-06 14:05:20 +00:00 |
depristo
|
edc44807af
|
rod's now have names. Use getName() to access it. Next step is better interface to accessing rods
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@286 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-04-03 16:41:33 +00:00 |
|
depristo
|
24e8581c30
|
Slight improvements to allele caller interface; fixed problem with printing progress
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-04-02 16:44:12 +00:00 |
|
depristo
|
7ce280723f
|
Updated todo list
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-04-01 20:31:42 +00:00 |
|
hanna
|
d37d81822d
|
Fixed the Hello, World doc to reflect the collapse in the walker hierarchy.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@238 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-31 15:23:29 +00:00 |
|
hanna
|
8e2ba7a294
|
Added more detail to documentation based on the feedback I've been getting
on command-line arguments.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@237 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-31 15:21:05 +00:00 |
|
hanna
|
8be02f6a34
|
Check in the omniplan file for easier sharing.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-30 21:31:54 +00:00 |
|
hanna
|
20e650f397
|
Added examples that can be cut and pasted.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@227 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-30 19:05:44 +00:00 |
|
hanna
|
1d972969a9
|
A dumping ground for information that will eventually become the GATK user manual. Currently has basic information about command-line arguments and walker output streams.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@223 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-30 16:04:30 +00:00 |
aaron
|
9840a089ef
|
Added documentation for our coding standards.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@193 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-25 19:42:09 +00:00 |
|
aaron
|
09d605bb37
|
Changed how the example walker gets run, I'm about to check in the GNU style command line args.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@143 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-22 20:10:17 +00:00 |
|
hanna
|
6fdd622160
|
Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@104 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-19 22:41:12 +00:00 |
|
hanna
|
41fec1565c
|
Hello, world! for GATK.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@101 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-19 21:46:22 +00:00 |
|
hanna
|
3ac3592ee4
|
IntelliJ cleanup. Added docs on build environment.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@61 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-16 15:26:34 +00:00 |
|
hanna
|
feb70ff627
|
Added instructions for 3rd party sources and remote debugging.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@59 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-16 01:29:48 +00:00 |
|
hanna
|
28d1e33e3b
|
Added description of available ant tasks, help using intellij on Linux.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@58 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-16 00:03:55 +00:00 |
|
aaron
|
45d69397b7
|
Added the beginnings of a guide to integrating our code with Intellij
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@49 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-03-13 18:44:13 +00:00 |