gatk-3.8

Author	SHA1	Message	Date
hanna	6e60cddfed	A fix for the 'rod blows up when it hits a GenomeLoc outside the reference' issu e. Really a stopgap; error handling in the RODs needs to be addressed in a more comprehensive way. Right now, hasNext() isn't guaranteed to be correct. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@878 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-02 18:14:46 +00:00
asivache	c252fec1bc	synchronizing, no real changes git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@859 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-29 21:56:14 +00:00
asivache	99524ab6d0	package name corrected git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@839 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-27 18:20:43 +00:00
asivache	b76f8c4eb5	moved from playground to gatk git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@838 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-27 18:18:33 +00:00