rpoplin
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6c7a0adc76
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Updating VariantGaussianMixtureModelUnitTest to use truth sensitivity cutting
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5750 348d0f76-0448-11de-a6fe-93d51630548a
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2011-05-04 13:56:01 +00:00 |
depristo
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ef2f6d90d2
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VQSR now operates on LOD scores in the INFO field directly, and doesn't adjust the QUAL field. New format for tranches file uses LOD score. Old file format no longer supported. log10sumlog10() function, a very useful utility in MathUtils. No more ExtendedPileupElement! Robust math calculations in GMM so that no infinities are generated! HaplotypeScore refactored to enable use of filtered context. Not yet enabled... InferredContext getDouble and getInteger arguments now parse values from Strings if necessary
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4684 348d0f76-0448-11de-a6fe-93d51630548a
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2010-11-15 22:19:22 +00:00 |
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depristo
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ac52b64b77
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correct test data
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4665 348d0f76-0448-11de-a6fe-93d51630548a
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2010-11-13 22:17:38 +00:00 |
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depristo
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c5f8c4dd0d
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VariantEval test for tranches file, plus cutting over VE to use the generic Tranches framework
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4656 348d0f76-0448-11de-a6fe-93d51630548a
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2010-11-12 13:52:40 +00:00 |