hanna
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71e3825fa1
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First pass of a walker for Eric that searches through an input BAM file for unclean reads, injecting the cleaned reads in their place and outputting the composite result.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@989 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-11 20:18:13 +00:00 |
aaron
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195b4ea7b4
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a rename for consistancy of Sam to SAM, creating a genotype utils dir, and moving the GLF code into it.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@984 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-11 17:46:06 +00:00 |
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aaron
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eb962fe52a
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adding an artificial sam file writer, used to unit test some of the walkers (mainly the PrintReadsWalker)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@956 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-09 21:47:49 +00:00 |